Philip Morris
Research Proposal (Renewal) Control of Gene Expression in Cancerous Cells
Fields
- Author
- Ashok, B.T.
- Dipietrantonio, A.M.
- Evangelista, Cas
- Hsieh, T.
- Wu, J.M.
- Dipietrantonio, A.M.
- Area
- REIF,HELMUT/OFFICE
- Type
- SREP, RESEARCH PROPOSAL, SCIENTIFIC
- BIBL, BIBLIOGRAPHY
- CHAR, CHART, GRAPH, TABLE, MAPS
- DRAW, DRAWING
- RESU, RESUME
- BIBL, BIBLIOGRAPHY
- Site
- E5
- Named Person
- Ashok, B.T.
- Beckman
- Chen, S.
- Darzynkiewicz
- Dipietrantonio, A.M.
- Du, Y.X.
- Evangelista, Cas
- Gao, Y.T.
- Gleason
- Gorman
- Groudine
- Gutstein, W.H.
- Horowitz
- Hsieh, T.
- Huang
- Huang, Y.Z.
- Konno
- Ku
- Lang
- Mallouh
- Matsudaira
- Suhadolnik, R.J.
- Traganos
- Wormser
- Wu, J.M.
- Wu, Z.L.
- Xu
- Zhou
- Beckman
- Named Organization
- Amu
- Botanic Lab
- Cancer Research Inst
- China Medical Univ
- College of Charleston
- Dept of Pathology
- Dynal Lake Success
- Fitc
- Guangzhou Medical College
- Ibm
- Inst of Chemical Carcinogenesis
- Jn Medical College
- Kodak
- Nanjing Medical Univ
- NIH, Natl Inst of Health
- Ny Medical College
- Ny Univ
- Ny Univ Medical Center
- Philip Morris Co
- Philip Morris Co Inc
- Philip Morris Inc
- Phoenix Flow System
- Pi
- Rt Pcr
- Shanghai Cancer Inst
- Srrc
- Temple Univ
- TX Tech Univ
- Veterans General Hospital
- Botanic Lab
- Recipient (Organization)
- Philip Morris Co Inc
- Document File
- 2505442007/2505442196/Missing
- Litigation
- Feda/Produced
- Author (Organization)
- Ny Medical College
- Master ID
- 2505442008/2195
Related Documents:- 2505442063-2065 Relation of Exposure to Environmental Tobacco Smoke and Pulmonary Adenocarcinoma in Non-Smoking Women: a Case Control Study in Nanjing
- 2505442066-2074 Lifestyle Factors and Human Lung Cancer: an Overview of Recent Advances (Review)
- 2505442075-2107 Increased Serum Mitogenic Activity for Arterial Smooth Muscle Cells Associated With Relaxation and Low Educational Level in Human Subjects With High But Not Low Hostility Traits: Implications for Atherogenesis
- 2505442108-2109 Ms Number 96-274 Increased Serum Mitogenic Activity for Arterial Smooth Muscle Cells Associated With Relaxation and Low Educational Level in Human Subjects With High But Not Low Hostility Traits: Implications for Atherogenesis
- 2505442110-2111 Ms Number 96-274: Increased Serum Mitogenic Activity for Arterial Smooth Muscle Cells Associated With Relaxation and Low Educational Level in Human Subjects With High But Not Low Hostility Traits: Implications for Atherogenesis Reviewer's Comments (For Author)
- 2505442112-2131 Control of Human Vascular Smooth Muscle Cell Proliferation by Sera Derived From "Experimentally Stressed" Individuals
- 2505442132-2166 Stress and Atherogenesis. Smooth Muscle Cell Mitogenic Activity and Other Biochemical Changes Associated With Sera of "Stressed" Subjects
- 2505442167-2175 Resveratrol Inhibits Copper Ion-Induced and Azo Compound-Initiated Oxidative Modification of Human Low Density Lipoprotein
- 2505442176-2184 Regulation of G1/S Transition and Induction of Apoptosis in Hl-60 Leukemia Cells by Fenretinide (4hpr)
- 2505442185-2195 Grape-Derived Chemopreventive Agent Resveratrol Decreases Prostate-Specific Antigen (Psa) Expression in Lncap Cells by an Androgen Receptor (Ar)-Independent Mechanism
- Characteristic
- MARG, MARGINALIA
- MISS, MISSING PAGES
- PARE, PARENT
- MISS, MISSING PAGES
- Date Loaded
- 14 Oct 2003
- UCSF Legacy ID
- wqn43a00
Document Images
Figure 2
; ----=----. DNA Repair
,
, .
. ,
,
,
. ,
Anti-mitogenic effect
Cycle
Cell Cycle
Cell
aa
7
~~ ~/
S
blocking
G
~
~
Chemo-agent
e.g. 4-HPR,
resveratrol
*~ Apoptosis

Introduction
To facilitate review of this three-year competitive renewal proposal, I will summarize our
past accomplishments, hypothesis, specific aims, and proposed future studies, in section A.
Section B includes the budget, bibliography of the personnel, resources of the laboratory and
collaborative efforts of the principal investigator. Section C will provide a detailed description
and
explanation of the methods to be used for the proposed study, as well as the references cited.
Section D will list publications supported by the previous three-year grant period from the Philip
Morris Co., Inc. Representative publications will be included in the Appendix.

L1F~EWu2Z- 2
~jo ) 3 a~Erd
KaPa aAL SPUC, k~q8
I
2505442008

Table of Contents
Introduction p.3
Section A: Summary of proposed studies
I.Introduction
p.4-7
II. Previous studies and results
A. Studies with leukemia cells
p.8
B. Prostate cancer cell studies p.8
C. Lung cancer cell studies p.9
D. Studies relating stress and atherogenesis p.10
III. Proposed studies p.11-13
Section B
Detailed budget for initial budget period
p.14
Budget for entire proposed budget period p.15
Budget justification p.16-17
Biographical sketch-Prirtcipal Investigator p.18-21
Other Biographical sketches p.22-28
Other support p.29-30
Resources and environment p.31
Section C: Detailed Research Plan
I. Specific Aims
p.32
II. Background and Significance p.32-36
A. Diet and modification of cancer risks
B. Cell cycle control
C. Apoptosis and carcinogenesis
D. DNA repair
III. Research Methods
.36-42
A. Cell-biological assays
B. Biochemical methods
C. Molecular methods
IV. Literature Cited
.43-49
V. Human Subjects p.50
VI. Vertebrate Animals p.50
Section D
Publications supported by an unrestricted grant from Philip Morris, Inc., 95-98
p.51-54
A. Leukemia cell studies
B. Studies with prostate cancer cells
C. Lung cancer cell studies
D. Studies relating stress and atherogenesis
Appendix
Publications
~

Section A: Summary of Previous Accomplishments and
Proposed Future Studies
I. Introduction
Despite the progress made in cancer diagnosis, methods for early detection, improved
treatment modalities, and cellular, biochemical and molecular characterization of many forms of
malignancy, and significant gains in the treatment for a few specific types of cancer [11, the
overall mortality rates for most cancers and the total cancer incidence have remained
disproportionately high and continue to rise in westernized countries and cultures.[2]. Statistics
indicates that more than 30% of people will be diagnosed with cancer during their lifetime and
approximately 25% of total deaths may be ascribed to cancer. A particularly significant increase
has been noted in new cases of breast cancer in females, prostate cancer in males, and lung ca .er
in both sexes, in recent decade [3].
Although a multitude of factors including environment, hormones, lifestyle and inheritance
has been linked to the disease, a unifying theory of carcinogenesis has remained elusive. What is
clear, however, is that cancer is fundamentally a genetic disease at the cellular level, whose
evolution from normal cells involve multiple genetic events, for which there are a multiplicity of
steps leading to these events; the cumulative result is a disruption'of the normal regulatory
pattern
characterizing normal cells. Phenotypically therefore, cancer is characterized by uncontrolled
cellular growth and proliferation, a reduced capacity or loss of fidelity of DNA repair, and lack or
dysfunction of programmed cell death, also referred to as apoptosis (Figure 1).
Figure 1. Events and markers in relation to exposure and disease
4

r.
~ e o
e = -
F y 4
J
Genetic events leading to cancer may be triggered by exogenous exposures, endogenous
exposures, to potential carcinogens, or enzymatic errors in macromolecular syntheses. For most
cancers, however, the establishment of a cancerous state cannot be explained by a single gene
defect or an episodic exposure to adverse environmental challenges, but is more likely to be
caused by the interactions of multiple genomic and environmental factors, with distinct as well as
overlapping biological consequences [1-5]. This complex, multifactorial etiology implies that
there will be etiologic heterogeneity among cancer cases in the general population [2,6],
suggesting that the tracking of the cause for a given cancer type is subject to confounding and
making optimization of cancer prevention, detection and treatment a formidable if not an
unachievable task. Because of the recognition that we lack ability to easily trace the etiology or
eradicate invasive cancers, a new scientific view and perspective has emerged and gained
prominence in recent years for.4owering the cancer incidence and mortality, namely, to intervene
5

cancer at earlier disease stages. The consensus among experts is that such intervention can best be
done by naturally occurring substances in the diet [2,5].
Dietary factors may contribute to as much as a third of potentially preventable cancers and
the long-term preventive effect of plant-based diets on tumorigenesis is supported by extensive
epidemiological and laboratory studies. Fruits and vegetables, herbs and spices and specific food
ingredients have been reported to contain antimutagenic and anticarcinogenic potentials [2,7,8].
However, their broad use to prevent, inhibit, or even reverse carcinogenesis is limited by the fact
that in most cases, the manner by which diet/nutrition and specific dietary component(s) function
as chemopreventive agents has not been systematically investigated and rigorously tested.
The long-term interest and objective of this laboratory has been to elucidate the mechanism
of action of microchemicals and specific dietary components. For the past several years, we have
focussed on investigating the effects of retinoids, e.g., retinoic acid RA and fenretinide 4HPR,
antioxidants, e.g., resveratrol, and vitamins, e.g., vitamin D, on a number of cultured cancer
cells.
Our hypothesis is that these agents may act in common as pleiotropic cellular regulators to
selectively effect multiple changes in target cancer cells, the net result of which is that
cancerous
cells become non-carcinogenic. Possible proposed mechanisms include: (i) antimitogenic effects
in which these agents act by blocking G1/S transition of the cell cycle, (ii) apoptosis-activating
effect that results from the ability of these agents to regulate mitochondrial structure/function
and
consequentially the expression of the bcl-2 family of proteins and activation of caspases, and (iii)
modulation of DNA repair capacity and/or activity, mediated by changes in p53, poly(ADP-
ribose) polymerase (PARP), and the double-stranded DNA-dependent protein kinase (DNA-PK)
(Figure 2).
To validate the multiplicity of their actions, we have resorted to studying, in detail, the
effects of representative agents on model tissue culture systems and on expression of several key
regulatory protein molecules mentioned above. Key findings of these studies are presented below.
N
Cn
O
9
O
J
6 w

Salary will be adjusted upwards by 4% in years 2 and 3 to cover the cost of inflation. The
same percentage of increase will apply to the supply and miscellaneous categories.

The sequence of experiments regarding the above objectives is summarized below and in Figure 3.
Specific Aims One: Control of G1/S Two: Control of Three: Control of
transition a o tosis DNA re air
Target Cyclin D1 Bcl-2 family P53
genes/proteins Cdk 4,6 Cytochrome c PARP
proposed for analysis pRB, CKIs (p16, p2l Caspases DNA-PK
and p27)
Proposed Experiments For each Target Gene/Protein
Objective A roach Si ni5cance
Control of expression Western blot analysis Whether protein level changes
of protein level Metabolic labeling and Whether protein synthesis
immunoprecipitation accounts for change in protein
levels
Post-translational Phosphorylation and Determine importance of covalent
modification of dephosphorylation of modification
proteins protein
Specific processing of Evaluate role of proteolysis
roteins
Control of RNA level Northern and dot blot Distinguish transcriptional from
changes analysis post-transcriptional control
Actinomycin D and chase
Nuclei run-on experiments
Nuclease sensitivity assay Evaluate importance of DNA
Transfection experiments regions important for control of
Gel mobility shift assay gene expression
Affinity labeling of nucleic Demonstrate existence of
acid binding factors chemopreventive agent responsive
rotein re ulato factors
Role of ceramide Fumonisin B to block Importance of ceramide
ceramide synthesis biosynthesis in signalling of
a o tosis
Role of caspases Inhibitors, e.g., DEVD for Distinguish involvement of
CPP32, YVAD for ICE s ecific cas ases
12

- .-s-.F-a.' .
Figure 3. Summary of Proposed Studies '
e.g.4-1-IPR, ~ ~
resveratrol '
,-4Chemo-agent -,
Blockins GI/S DNA Repair
1 e,
G 1 IN S DNA damage
pR-B -lo pRB.
~ un(der) phosphorylated
i focm
~
E2F Cyclin D/CDK4~
hypelphosphorylated
form
p53*,d 0 p53 PARPA
i
L --* Apoptosis
Apoptosis
Survival sienai Death sieual
bcl-2 -lo bcI-2*
phosphorylated
form
ba
or
bcl-2 bc12/bax
(complex)
or
Protease
activity
PARP +
ed substrate
(PARP, actin,
chromatin)
Y
DNA repair
can not repair
~
~
~
L ------------------jj~
13
phosphorylated wj)dtype phosphoryl
fo I . form
Apoptosis
